STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2016KEGG: swd:Swoo_0368 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Slin_2017
PFAM: glucose-methanol-choline oxidoreductase; KEGG: swd:Swoo_0367 glucose-methanol-choline oxidoreductase.
 
     0.942
Slin_0076
PFAM: SMP-30/Gluconolaconase/LRE domain protein; Arylesterase; KEGG: kpn:KPN_03982 putative outer membrane protein; gluconolactonase.
     
  0.900
Slin_0411
PFAM: Carbohydrate kinase, FGGY-like; KEGG: sugar kinase; K00851 gluconokinase.
    
  0.900
Slin_2519
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: xcv:XCV4353 gluconolactonase precursor.
     
  0.900
Slin_3203
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ccs:CCNA_01282 gluconolactonase.
     
  0.900
Slin_5468
KEGG: bxe:Bxe_C1287 hypothetical protein.
     
  0.900
Slin_1371
PFAM: glucose-methanol-choline oxidoreductase; KEGG: swd:Swoo_0367 glucose-methanol-choline oxidoreductase.
 
     0.799
Slin_5812
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pin:Ping_3052 xylose isomerase domain- containing protein.
  
     0.611
Slin_5725
PFAM: protein of unknown function DUF1080; KEGG: pnu:Pnuc_1112 hypothetical protein.
  
     0.467
Slin_0438
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
 
     0.459
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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