Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Slin_2017PFAM: glucose-methanol-choline oxidoreductase; KEGG: swd:Swoo_0367 glucose-methanol-choline oxidoreductase. (581 aa)    
Predicted Functional Partners:
Slin_2016
KEGG: swd:Swoo_0368 hypothetical protein.
 
     0.940
Slin_6564
KEGG: cja:CJA_3100 hypothetical protein.
 
 
 0.755
Slin_4950
KEGG: amc:MADE_00435 twin-arginine translocation pathway signal.
 
 
 0.718
Slin_5805
KEGG: cak:Caul_4605 hypothetical protein.
 
 
 0.718
Slin_4689
KEGG: cja:CJA_3100 hypothetical protein.
 
 
 0.701
Slin_1890
KEGG: cja:CJA_3100 hypothetical protein.
 
 
 0.616
Slin_3462
PFAM: protein of unknown function DUF1080; KEGG: swd:Swoo_0366 hypothetical protein.
  
     0.493
Slin_4771
PFAM: protein of unknown function DUF1080; KEGG: ccs:CCNA_01698 cycloisomaltooligosaccharide glucanotransferase precursor.
  
     0.484
Slin_5812
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pin:Ping_3052 xylose isomerase domain- containing protein.
 
     0.455
Slin_2018
Hypothetical protein.
       0.431
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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