STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2021Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: pla:Plav_0594 hypothetical protein. (500 aa)    
Predicted Functional Partners:
Slin_2020
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: dps:DP0251 N-acylamino acid racemase (MenC).
       0.737
Slin_2018
Hypothetical protein.
 
     0.653
Slin_2022
PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_61560 putative MFS transporter.
       0.566
Slin_5609
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sdn:Sden_1685 hypothetical protein.
 
     0.559
Slin_4527
PFAM: putative esterase; KEGG: pat:Patl_2339 putative esterase.
  
     0.528
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
       0.526
Slin_0996
Hypothetical protein; KEGG: nis:NIS_1418 glycosyl transferase.
  
     0.508
Slin_2023
PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_0769 acetyltransferase.
       0.488
Slin_1315
GMP synthase - Glutamine amidotransferase domain- like protein; KEGG: scl:sce3772 hypothetical protein.
  
   
 0.486
Slin_4426
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mxa:MXAN_0654 MarR family transcriptional regulator.
  
 
 
 0.485
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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