STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2038PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; KEGG: hypothetical protein. (1024 aa)    
Predicted Functional Partners:
Slin_2039
Hypothetical protein.
 
     0.903
Slin_5203
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
 
  
 0.900
Slin_1995
Hypothetical protein; KEGG: ngk:NGK_1616 TonB.
 
   
 0.791
Slin_1781
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: xca:xccb100_4142 TolB-like protein.
 
  
 0.789
Slin_4436
PFAM: outer membrane chaperone Skp (OmpH); KEGG: mfa:Mfla_1521 outer membrane chaperone Skp (OmpH).
  
  
 0.760
Slin_5938
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1436 MotA/TolQ/ExbB proton channel.
 
  
 0.756
Slin_4754
KEGG: hypothetical protein.
  
  
 0.754
Slin_5600
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: mxa:MXAN_6246 OmpA domain-containing protein.
 
  
 0.750
Slin_5939
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mca:MCA2237 biopolymer ExbD/TolR family transporter.
 
  
 0.747
Slin_5837
PFAM: 4'-phosphopantetheinyl transferase; KEGG: aha:AHA_1313 4'- phosphopantetheinyltransferase family protein; Belongs to the P-Pant transferase superfamily.
  
     0.720
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.