STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2050PFAM: Insertion element protein; KEGG: nse:NSE_0489 hypothetical protein. (139 aa)    
Predicted Functional Partners:
Slin_2045
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eba:ebA169 fusion Na-dependent permease/histidine kinase domain-containing protein.
 
     0.830
Slin_2044
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rfr:Rfer_3778 response regulator receiver domain-containing protein.
 
     0.679
Slin_2048
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bba:Bd2344 hypothetical protein.
 
     0.541
Slin_1923
Hypothetical protein; KEGG: sde:Sde_3885 TetR family transcriptional regulator.
  
     0.456
Slin_2021
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: pla:Plav_0594 hypothetical protein.
  
    0.453
Slin_2049
KEGG: geo:Geob_0198 hypothetical protein.
       0.446
Slin_0447
PFAM: Lycopene beta and epsilon cyclase; FAD dependent oxidoreductase; KEGG: pub:SAR11_0122 lycopene cyclase.
  
    0.411
Slin_4495
KEGG: nmu:Nmul_A0462 hypothetical protein.
 
     0.409
Slin_5347
KEGG: ilo:IL2050 hypothetical protein.
  
     0.403
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.