Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Slin_1201 | Slin_2084 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_7144 ABC transporter, ATP-binding protein. | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | 0.759 |
Slin_1201 | Slin_4582 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_7144 ABC transporter, ATP-binding protein. | Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: cps:CPS_4705 sensory box sensor histidine kinase. | 0.443 |
Slin_1201 | Slin_4588 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_7144 ABC transporter, ATP-binding protein. | TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_0328 ABC transporter permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.631 |
Slin_2081 | Slin_2082 | Hypothetical protein. | PFAM: transcriptional regulator PadR family protein. | 0.428 |
Slin_2081 | Slin_2083 | Hypothetical protein. | Hypothetical protein. | 0.428 |
Slin_2081 | Slin_2084 | Hypothetical protein. | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | 0.428 |
Slin_2082 | Slin_2081 | PFAM: transcriptional regulator PadR family protein. | Hypothetical protein. | 0.428 |
Slin_2082 | Slin_2083 | PFAM: transcriptional regulator PadR family protein. | Hypothetical protein. | 0.773 |
Slin_2082 | Slin_2084 | PFAM: transcriptional regulator PadR family protein. | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | 0.773 |
Slin_2083 | Slin_2081 | Hypothetical protein. | Hypothetical protein. | 0.428 |
Slin_2083 | Slin_2082 | Hypothetical protein. | PFAM: transcriptional regulator PadR family protein. | 0.773 |
Slin_2083 | Slin_2084 | Hypothetical protein. | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | 0.773 |
Slin_2084 | Slin_1201 | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_7144 ABC transporter, ATP-binding protein. | 0.759 |
Slin_2084 | Slin_2081 | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | Hypothetical protein. | 0.428 |
Slin_2084 | Slin_2082 | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | PFAM: transcriptional regulator PadR family protein. | 0.773 |
Slin_2084 | Slin_2083 | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | Hypothetical protein. | 0.773 |
Slin_2084 | Slin_2350 | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4701 ABC transporter, ATP-binding protein. | 0.622 |
Slin_2084 | Slin_2352 | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: shm:Shewmr7_3161 efflux transporter, RND family, MFP subunit. | 0.430 |
Slin_2084 | Slin_4582 | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: cps:CPS_4705 sensory box sensor histidine kinase. | 0.762 |
Slin_2084 | Slin_4588 | PFAM: protein of unknown function DUF214; KEGG: cps:CPS_4700 ABC transporter, permease protein. | TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_0328 ABC transporter permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.827 |
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