STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2105Hypothetical protein. (331 aa)    
Predicted Functional Partners:
Slin_2106
PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: cja:CJA_3066 endo-beta-1,4-xylanase, xyn10C.
 
     0.935
Slin_2104
PFAM: RagB/SusD domain protein.
 
     0.901
Slin_2103
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.895
Slin_2102
PFAM: RagB/SusD domain protein.
 
     0.847
Slin_2101
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.838
Slin_2107
Two component transcriptional regulator, AraC family; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; helix- turn-helix- domain containing protein AraC type; histidine kinase A domain protein; SMART: response regulator receiver; Helix-turn- helix, AraC domain; histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: sdn:Sden_1699 ATP-binding region, ATPase-like protein.
 
     0.825
Slin_1418
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: scl:sce9311 hypothetical protein.
  
     0.723
Slin_3391
PFAM: RagB/SusD domain protein.
  
     0.622
Slin_1420
PFAM: glycoside hydrolase family 43; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.615
Slin_2108
PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: scl:sce3304 putative xylosidase/arabinosidase.
 
     0.596
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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