STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2143SMART: Helix-turn-helix, AraC domain; KEGG: sbl:Sbal_2330 helix-turn-helix domain- containing protein. (269 aa)    
Predicted Functional Partners:
Slin_2145
PFAM: alpha/beta hydrolase fold; KEGG: cak:Caul_3206 TAP domain-containing protein.
 
     0.900
Slin_3824
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: bam:Bamb_5221 AraC family transcriptional regulator.
  
   0.680
Slin_2144
PFAM: putative esterase; SMART: Tetratricopeptide repeat; KEGG: shn:Shewana3_1514 putative esterase.
 
     0.666
Slin_6228
PFAM: RagB/SusD domain protein; KEGG: bxe:Bxe_B2908 putative haemagglutinin.
  
     0.648
Slin_6229
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.628
Slin_5306
PFAM: metallophosphoesterase; KEGG: afw:Anae109_3838 metallophosphoesterase.
  
     0.569
Slin_2685
KEGG: ccs:CCNA_03020 hypothetical protein.
  
     0.559
Slin_5450
PFAM: small multidrug resistance protein; KEGG: bid:Bind_1965 small multidrug resistance protein.
 
     0.550
Slin_0107
PFAM: RagB/SusD domain protein; KEGG: mxa:MXAN_4747 putative lipoprotein.
  
     0.541
Slin_1642
PFAM: type 3a cellulose-binding domain protein; KEGG: eca:ECA1981 endoglucanase V.
  
     0.538
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.