STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2202PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_03389 lantibiotic transport ATP- binding protein. (301 aa)    
Predicted Functional Partners:
Slin_2201
Hypothetical protein; KEGG: sat:SYN_01457 export ABC transporter permease protein.
 
  
 0.939
Slin_0316
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SM_b21146 putative choline uptake ABC transporter ATP-binding protein.
 
    
0.917
Slin_1196
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ftn:FTN_0902 ABC transporter, ATP-binding protein.
     
0.898
Slin_4874
KEGG: mxa:MXAN_4075 hypothetical protein.
  
 
 0.744
Slin_6627
TIGRFAM: gliding motility-associated ABC transporter permease protein GldF; KEGG: pat:Patl_3143 ABC-2 type transporter.
  
 
 0.675
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.566
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
 
 0.540
Slin_2203
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: sde:Sde_2274 AraC family transcriptional regulator.
       0.538
Slin_5126
PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: ccs:CCNA_03558 ATP synthase subunit epsilon.
   
   0.526
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
    0.457
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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