STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2238PFAM: glycosyl transferase family 2; KEGG: kpe:KPK_5153 N-glycosyltransferase PgaC. (374 aa)    
Predicted Functional Partners:
Slin_2239
KEGG: gme:Gmet_1389 hypothetical protein.
 
     0.858
Slin_2237
PFAM: polysaccharide deacetylase; KEGG: cps:CPS_5017 polysaccharide deacetylase family protein.
 
  
 0.769
Slin_2236
PFAM: glycosyl transferase family 2; KEGG: mch:Mchl_3743 glycosyl transferase family 2.
 
    
0.695
Slin_5852
Hypothetical protein.
  
     0.688
Slin_5644
Geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P); Belongs to the GGGP/HepGP synthase family. Group II subfamily.
  
     0.679
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.626
Slin_0248
KEGG: wsu:WS2183 hypothetical protein.
 
     0.542
Slin_6302
PFAM: glycosyl transferase family 2; KEGG: bph:Bphy_1225 glycosyl transferase family protein.
 
   
 0.431
Slin_1615
PFAM: glycosyl transferase family 2; KEGG: rfr:Rfer_0687 glycosyl transferase family protein.
 
   
 0.416
Slin_2583
PFAM: glycosyl transferase family 2; KEGG: pnu:Pnuc_0306 glycosyl transferase family protein.
  
    0.415
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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