STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2308PFAM: transcriptional regulator PadR family protein; KEGG: azc:AZC_1276 transcriptional regulator. (124 aa)    
Predicted Functional Partners:
Slin_2744
PFAM: transcriptional regulator PadR family protein; KEGG: rle:RL3102 PadR family transcriptional regulator.
  
     0.651
Slin_2309
Hypothetical protein.
       0.645
Slin_3821
Hypothetical protein.
 
     0.471
Slin_2307
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sil:SPOA0438 peptidyl-prolyl cis-trans isomerase, FKBP-type.
       0.401
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.