STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2324Transposase and inactivated derivatives-like protein; KEGG: maq:Maqu_0609 transposase. (336 aa)    
Predicted Functional Partners:
Slin_4556
Hypothetical protein.
  
     0.663
Slin_2323
Hypothetical protein.
       0.661
Slin_2325
SMART: Helix-turn-helix, AraC domain; KEGG: mmw:Mmwyl1_3635 helix-turn-helix domain- containing protein.
       0.474
Slin_2326
PFAM: monooxygenase FAD-binding; KEGG: hypothetical protein.
       0.445
Slin_5723
PFAM: regulatory protein TetR; KEGG: bja:blr0601 transcriptional regulatory protein.
  
     0.402
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.