STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2341KEGG: eca:ECA2804 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Slin_2340
PFAM: RES domain protein; KEGG: swd:Swoo_2462 RES domain-containing protein.
 
   0.957
Slin_2003
PFAM: RES domain protein; KEGG: kpe:KPK_A0046 RES domain protein.
 
   0.769
Slin_3769
PFAM: RES domain protein; KEGG: pst:PSPTO_1037 hypothetical protein.
 
   0.649
Slin_1541
PFAM: RES domain protein; KEGG: eca:ECA2803 hypothetical protein.
 
   0.648
Slin_3684
PFAM: RES domain protein; KEGG: plu:plu2358 hypothetical protein.
 
   0.629
Slin_3818
PFAM: RES domain protein; KEGG: bac:BamMC406_5847 RES domain-containing protein.
 
   0.625
Slin_2118
PFAM: RES domain protein; KEGG: bac:BamMC406_5847 RES domain-containing protein.
 
   0.620
Slin_0875
PFAM: RES domain protein; KEGG: psb:Psyr_0884 hypothetical protein.
 
   0.616
Slin_3703
PFAM: RES domain protein; KEGG: bac:BamMC406_5847 RES domain-containing protein.
 
   0.614
Slin_0856
PFAM: RES domain protein; KEGG: bac:BamMC406_5847 RES domain-containing protein.
 
   0.594
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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