STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2417KEGG: amc:MADE_00608 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Slin_2418
Hypothetical protein.
       0.789
Slin_5532
KEGG: rpa:RPA2819 hypothetical protein.
  
   
 0.618
Slin_1011
KEGG: scl:sce1131 hypothetical protein.
  
     0.571
Slin_4050
PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: amc:MADE_00119 type III restriction enzyme, res subunit.
  
     0.561
Slin_2419
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sit:TM1040_3871 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
       0.556
Slin_2420
KEGG: hypothetical protein.
       0.556
Slin_5923
Hypothetical protein; KEGG: pha:PSHAb0321 putative enzyme with ATPase activity.
  
     0.550
Slin_0051
KEGG: scl:sce5012 hypothetical protein.
  
     0.536
Slin_0414
PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein.
  
     0.527
Slin_1012
PFAM: protein of unknown function UPF0175; KEGG: scl:sce5011 hypothetical protein.
  
     0.526
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.