STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2425Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. (420 aa)    
Predicted Functional Partners:
Slin_1533
3-oxoacid CoA-transferase, B subunit; KEGG: dar:Daro_1021 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3- oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; Belongs to the 3-oxoacid CoA-transferase family.
   
    0.665
Slin_2426
PFAM: Protein of unknown function DUF2166; KEGG: hypothetical protein.
       0.636
Slin_2424
PFAM: beta-lactamase domain protein; KEGG: mpo:Mpop_4636 beta-lactamase domain protein.
  
    0.565
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.539
Slin_2427
Hypothetical protein.
       0.456
Slin_0262
KEGG: amc:MADE_02647 Xaa-Pro aminopeptidase family enzyme.
  
 
 0.425
Slin_3457
PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: hypothetical protein.
  
 
 0.425
Slin_4290
Hypothetical protein.
  
 
 0.425
Slin_2423
Double-stranded RNA/RNA-DNA hybrid binding protein-like protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
       0.416
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.