STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2444PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: dal:Dalk_2437 ion transport protein. (271 aa)    
Predicted Functional Partners:
Slin_3227
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: AGAP008064-PA; K01719 uroporphyrinogen-III synthase.
  
    0.642
nuoH
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
       0.548
Slin_3964
KEGG: oan:Oant_2990 pyridoxal phosphate-dependent enzyme, putative.
   
    0.522
Slin_3968
KEGG: ara:Arad_7947 L-seryl-tRNA(ser) selenium transferase protein.
   
    0.522
Slin_2445
KEGG: ade:Adeh_3982 hypothetical protein.
       0.472
asnS
TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bba:Bd1054 asparaginyl-tRNA synthetase.
       0.415
Slin_2912
KEGG: sun:SUN_1925 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib.
 
  
 0.408
Slin_5890
PFAM: Fmu (Sun) domain protein; KEGG: vfi:VF_1274 rRNA (cytosine-C(5)-)- methyltransferase RsmF.
  
    0.400
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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