STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2448PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: atc:AGR_L_1280 probable short-chain dehydrogenase PA0658; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa)    
Predicted Functional Partners:
Slin_2447
PFAM: Phytanoyl-CoA dioxygenase; KEGG: reu:Reut_B5568 phytanoyl-CoA dioxygenase.
 
     0.803
Slin_3808
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bja:blr7566 oxidoreductase.
 
 
   0.608
Slin_4802
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hch:HCH_02028 short-chain alcohol dehydrogenase-like protein.
  
 
   0.603
Slin_4809
PFAM: Phytanoyl-CoA dioxygenase; KEGG: hypothetical protein.
  
     0.593
Slin_2520
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B0443 glucose 1-dehydrogenase.
  
 
   0.570
Slin_1007
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azc:AZC_3534 short-chain dehydrogenase.
  
 
   0.498
Slin_4561
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: net:Neut_2038 TonB-dependent receptor.
  
     0.453
Slin_2446
PFAM: surface antigen (D15); KEGG: spe:Spro_2510 putative outer membrane protein.
 
    0.430
Slin_2449
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: mxa:MXAN_4081 putative ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
       0.418
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.