STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2454PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1024 aa)    
Predicted Functional Partners:
Slin_2453
PFAM: RagB/SusD domain protein.
     0.925
Slin_6415
Hypothetical protein; KEGG: tgr:Tgr7_1417 outer membrane protein domain- containing protein.
  
 
   0.778
Slin_6287
PFAM: RagB/SusD domain protein.
 
     0.688
Slin_4978
PFAM: RagB/SusD domain protein.
     0.634
Slin_2765
PFAM: RagB/SusD domain protein.
  
     0.609
Slin_4309
Hypothetical protein; KEGG: AGAP012940-PA.
  
     0.600
Slin_5058
PFAM: RagB/SusD domain protein.
  
     0.582
Slin_4563
Hypothetical protein; KEGG: aeh:Mlg_2858 outer membrane protein domain- containing protein.
  
 
   0.551
Slin_3122
Hypothetical protein; KEGG: cti:RALTA_B0326 conserved hypothetical protein, BNR repeats; putative outer membrane protein.
  
     0.545
Slin_2730
PFAM: RagB/SusD domain protein.
  
     0.519
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.