STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2464PFAM: ABC-2 type transporter; KEGG: gbm:Gbem_2581 ABC-2 type transporter. (286 aa)    
Predicted Functional Partners:
Slin_2463
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2358 ABC transporter related.
 
 0.999
Slin_2571
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2358 ABC transporter related.
 
 0.997
Slin_2570
PFAM: ABC-2 type transporter; KEGG: ppd:Ppro_2109 ABC-2 type transporter.
  
  
 
0.920
Slin_2462
PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03196 glycosyltransferase.
 
  
 0.886
Slin_2461
PFAM: glycosyl transferase family 2; KEGG: met:M446_3307 glycosyl transferase family protein.
 
  
 0.836
Slin_2465
PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0556 glycosyl transferase family protein.
 
  
 0.791
Slin_4165
KEGG: psa:PST_2890 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like.
  
  
 0.686
Slin_3852
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2884 glycosyl transferase family protein.
 
  
 0.433
Slin_4927
PFAM: glycosyl transferase family 2; KEGG: apa:APP7_1479 glycosyl transferase, group 2 family protein.
 
  
 0.430
Slin_5047
PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1298 glycosyl transferase family protein.
 
  
 0.423
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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