STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2466PFAM: protein of unknown function DUF1508; KEGG: sit:TM1040_2613 hypothetical protein. (110 aa)    
Predicted Functional Partners:
Slin_0302
PFAM: Peptidoglycan-binding lysin domain; transport- associated; SMART: Peptidoglycan-binding LysM; KEGG: aci:ACIAD0873 LysM domain/BON superfamily protein.
 
   0.973
Slin_4108
PFAM: GPW/gp25 family protein.
   
   0.915
Slin_4792
Trehalose-phosphatase; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase family 20; trehalose- phosphatase.
   
    0.889
Slin_3529
KEGG: rpi:Rpic_4161 transglycosylase-associated protein.
 
  
 0.646
Slin_5692
PFAM: Fructosamine/Ketosamine-3-kinase; aminoglycoside phosphotransferase; KEGG: hch:HCH_00321 fructosamine-3-kinase.
   
    0.552
Slin_2467
PFAM: NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: hypothetical protein.
  
    0.430
murQ
Glucokinase regulatory-like protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
      0.423
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.