Slin_2472 protein (Spirosoma linguale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Slin_2472

PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein. (1172 aa)

Predicted Functional Partners:

Slin_3033

0.792

Slin_5055

0.792

Slin_5972

0.776

Slin_4663

0.769

Slin_4660

0.759

Slin_2471

0.727

Slin_4664

0.719

Slin_2470

0.702

Slin_4661

0.675

Slin_2473

0.629

Your Current Organism:

Spirosoma linguale

NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Slin_2470	Slin_2471	TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: tau:Tola_0779 gluconate transporter.	PFAM: 5-methylcytosine restriction system component- like protein; KEGG: ecw:EcE24377A_3330 hypothetical protein.	0.746
Slin_2470	Slin_2472	TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: tau:Tola_0779 gluconate transporter.	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	0.702
Slin_2470	Slin_2473	TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: tau:Tola_0779 gluconate transporter.	PFAM: RagB/SusD domain protein.	0.476
Slin_2471	Slin_2470	PFAM: 5-methylcytosine restriction system component- like protein; KEGG: ecw:EcE24377A_3330 hypothetical protein.	TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: tau:Tola_0779 gluconate transporter.	0.746
Slin_2471	Slin_2472	PFAM: 5-methylcytosine restriction system component- like protein; KEGG: ecw:EcE24377A_3330 hypothetical protein.	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	0.727
Slin_2471	Slin_2473	PFAM: 5-methylcytosine restriction system component- like protein; KEGG: ecw:EcE24377A_3330 hypothetical protein.	PFAM: RagB/SusD domain protein.	0.491
Slin_2472	Slin_2470	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: tau:Tola_0779 gluconate transporter.	0.702
Slin_2472	Slin_2471	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	PFAM: 5-methylcytosine restriction system component- like protein; KEGG: ecw:EcE24377A_3330 hypothetical protein.	0.727
Slin_2472	Slin_2473	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	PFAM: RagB/SusD domain protein.	0.629
Slin_2472	Slin_3033	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	Hypothetical protein; KEGG: nmu:Nmul_A0927 phosphoesterase, PA- phosphatase related.	0.792
Slin_2472	Slin_4660	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	PFAM: phosphoesterase PA-phosphatase related; KEGG: nmu:Nmul_A0927 phosphoesterase, PA- phosphatase related.	0.759
Slin_2472	Slin_4661	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	Hypothetical protein.	0.675
Slin_2472	Slin_4663	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	PFAM: phosphoesterase PA-phosphatase related; KEGG: nmu:Nmul_A0927 phosphoesterase, PA- phosphatase related.	0.769
Slin_2472	Slin_4664	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	Hypothetical protein.	0.719
Slin_2472	Slin_5055	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	PFAM: phosphoesterase PA-phosphatase related; KEGG: nmu:Nmul_A0927 phosphoesterase, PA- phosphatase related.	0.792
Slin_2472	Slin_5972	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	Hypothetical protein; KEGG: nmu:Nmul_A0927 phosphoesterase, PA- phosphatase related.	0.776
Slin_2473	Slin_2470	PFAM: RagB/SusD domain protein.	TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: tau:Tola_0779 gluconate transporter.	0.476
Slin_2473	Slin_2471	PFAM: RagB/SusD domain protein.	PFAM: 5-methylcytosine restriction system component- like protein; KEGG: ecw:EcE24377A_3330 hypothetical protein.	0.491
Slin_2473	Slin_2472	PFAM: RagB/SusD domain protein.	PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.	0.629
Slin_2473	Slin_4664	PFAM: RagB/SusD domain protein.	Hypothetical protein.	0.410

page 1 of 3

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About