STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2531PFAM: YceI family protein; KEGG: azo:azo2870 hypothetical protein; Belongs to the UPF0312 family. (186 aa)    
Predicted Functional Partners:
Slin_2530
Hypothetical protein.
       0.779
Slin_2532
PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: pin:Ping_0256 naringenin-chalcone synthase.
       0.725
Slin_4329
PFAM: YceI family protein; KEGG: bba:Bd2001 YCE I like family protein; Belongs to the UPF0312 family.
  
     0.710
Slin_2529
PFAM: protein of unknown function DUF1223; KEGG: pla:Plav_1401 hypothetical protein.
       0.639
Slin_2533
PFAM: UbiA prenyltransferase; KEGG: dol:Dole_2097 UbiA prenyltransferase.
 
     0.623
Slin_2534
KEGG: scl:sce2183 3-demethylubiquinone-9 3-O- methyltransferase.
       0.567
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.