STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2541PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: asu:Asuc_0321 alpha amylase catalytic region. (467 aa)    
Predicted Functional Partners:
Slin_2883
PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; Cyclo-malto-dextrinase-like; SMART: alpha amylase catalytic sub domain; KEGG: cja:CJA_0735 alpha-amylase, putative, amy13E; Belongs to the glycosyl hydrolase 13 family.
    
0.711
Slin_1089
PFAM: major facilitator superfamily MFS_1; KEGG: smt:Smal_1021 major facilitator superfamily MFS_1.
 
  
 0.667
Slin_2540
KEGG: vcj:VCD_001738 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.650
Slin_0399
TIGRFAM: trehalose synthase-fused possible maltokinase; KEGG: gbm:Gbem_0136 trehalose synthase.
 
 0.590
Slin_2542
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: mxa:MXAN_6246 OmpA domain-containing protein.
       0.519
Slin_4527
PFAM: putative esterase; KEGG: pat:Patl_2339 putative esterase.
 
     0.513
Slin_4791
KEGG: ppd:Ppro_3263 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
 
0.507
Slin_4463
PFAM: Starch synthase catalytic domain protein; KEGG: gbm:Gbem_3400 glycogen/starch synthase, ADP- glucose type.
 
  
 0.504
Slin_5282
KEGG: sfu:Sfum_2351 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; 4-alpha- glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
  
 0.497
Slin_4792
Trehalose-phosphatase; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase family 20; trehalose- phosphatase.
 
 
 0.466
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.