STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2555PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: hypothetical protein. (264 aa)    
Predicted Functional Partners:
Slin_2554
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cja:CJA_2424 glucose-fructose oxidoreductase.
  
    0.559
Slin_4581
KEGG: cak:Caul_0966 hypothetical protein.
  
   
 0.544
Slin_5104
PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; KEGG: rak:A1C_06150 NADH dehydrogenase subunit G.
    
 
 0.521
Slin_5103
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
   0.501
Slin_5102
KEGG: wol:WD0734 NADH dehydrogenase subunit E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit.
    
   0.493
Slin_4869
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pmr:PMI3426 sugare isomerase.
  
     0.492
Slin_2556
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: azc:AZC_0735 hypothetical protein.
       0.478
Slin_5084
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: scl:sce6608 hypothetical protein.
  
    0.412
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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