STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2571PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2358 ABC transporter related. (419 aa)    
Predicted Functional Partners:
Slin_2570
PFAM: ABC-2 type transporter; KEGG: ppd:Ppro_2109 ABC-2 type transporter.
 
 0.999
Slin_2464
PFAM: ABC-2 type transporter; KEGG: gbm:Gbem_2581 ABC-2 type transporter.
 
 0.997
Slin_2463
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2358 ABC transporter related.
  
  
 
0.905
Slin_2568
PFAM: Soluble ligand binding domain; polysaccharide export protein; KEGG: saz:Sama_2264 ClpX, ATPase regulatory subunit.
  
  
 0.672
Slin_2572
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pfo:Pfl01_4046 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.619
Slin_5516
KEGG: sfu:Sfum_3894 phosphoribosyltransferase.
   
    0.615
Slin_2465
PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0556 glycosyl transferase family protein.
 
  
 0.586
Slin_2569
Hypothetical protein; KEGG: im:7151086; si:ch211-250g4.3.
       0.546
Slin_2582
PFAM: glycosyl transferase group 1; KEGG: fph:Fphi_1475 glycosyl transferase, group 1.
 
 
 0.546
Slin_2462
PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03196 glycosyltransferase.
 
  
 0.491
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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