STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2615TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mxa:MXAN_6178 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (380 aa)    
Predicted Functional Partners:
Slin_2617
PFAM: outer membrane efflux protein; KEGG: mxa:MXAN_6176 outer membrane efflux protein.
 
  0.984
Slin_2616
PFAM: acriflavin resistance protein; KEGG: mxa:MXAN_6177 AcrB/AcrD/AcrF family efflux transporter, inner membrane component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.967
Slin_1020
PFAM: acriflavin resistance protein; KEGG: mca:MCA2131 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.964
Slin_0461
PFAM: acriflavin resistance protein; KEGG: mxa:MXAN_6177 AcrB/AcrD/AcrF family efflux transporter, inner membrane component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.875
Slin_0256
PFAM: acriflavin resistance protein; KEGG: mxa:MXAN_6177 AcrB/AcrD/AcrF family efflux transporter, inner membrane component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.865
Slin_5200
PFAM: acriflavin resistance protein; KEGG: bja:bll0301 cation efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.841
Slin_0462
PFAM: outer membrane efflux protein; KEGG: mxa:MXAN_6176 outer membrane efflux protein.
 
   0.811
Slin_2692
PFAM: outer membrane efflux protein; KEGG: sat:SYN_02462 type I secretion outer membrane protein.
 
  0.775
Slin_3177
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; outer membrane efflux protein; KEGG: ajs:Ajs_1849 CzcA family heavy metal efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.752
Slin_2351
KEGG: sat:SYN_01010 type I secretion outer membrane protein.
  
 0.731
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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