STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2622PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: pat:Patl_1852 glycoside hydrolase family protein. (521 aa)    
Predicted Functional Partners:
Slin_2624
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: spl:Spea_1514 kelch repeat-containing protein.
     0.985
Slin_2625
PFAM: dihydrodipicolinate synthetase; KEGG: vcj:VCD_002594 N-acetylneuraminate lyase; Belongs to the DapA family.
 
     0.870
Slin_2623
PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_5760 major facilitator family transporter.
 
     0.858
Slin_2629
PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: pha:PSHAb0159 putative sialidase.
     0.788
Slin_2626
PFAM: RagB/SusD domain protein.
 
 
   0.726
Slin_2630
PFAM: N-acylglucosamine 2-epimerase; KEGG: hypothetical protein; K01787 N- acylglucosamine 2-epimerase.
 
     0.640
Slin_2627
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.617
Slin_2628
PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ara:Arad_8484 transcriptional regulator protein.
 
     0.535
Slin_0271
N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).
 
     0.515
Slin_5917
N-acyl-D-glucosamine 2-epimerase-like protein; KEGG: hypothetical protein; K01787 N- acylglucosamine 2-epimerase.
 
     0.481
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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