STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2623PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_5760 major facilitator family transporter. (422 aa)    
Predicted Functional Partners:
Slin_2624
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: spl:Spea_1514 kelch repeat-containing protein.
 
     0.931
Slin_2625
PFAM: dihydrodipicolinate synthetase; KEGG: vcj:VCD_002594 N-acetylneuraminate lyase; Belongs to the DapA family.
 
  
 0.915
Slin_2622
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: pat:Patl_1852 glycoside hydrolase family protein.
 
     0.858
Slin_2626
PFAM: RagB/SusD domain protein.
 
     0.831
Slin_2627
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.798
Slin_2629
PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: pha:PSHAb0159 putative sialidase.
 
     0.732
Slin_2628
PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ara:Arad_8484 transcriptional regulator protein.
 
   
 0.727
Slin_3977
PFAM: lipolytic protein G-D-S-L family; KEGG: xcc:XCC1515 acetylhydrolase.
  
     0.425
Slin_2630
PFAM: N-acylglucosamine 2-epimerase; KEGG: hypothetical protein; K01787 N- acylglucosamine 2-epimerase.
 
     0.422
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.