STRINGSTRING
Slin_2623 protein (Spirosoma linguale) - STRING interaction network
"Slin_2623" - Major facilitator superfamily protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2623Major facilitator superfamily protein (422 aa)    
Predicted Functional Partners:
Slin_2622
Hypothetical protein (521 aa)
 
          0.962
Slin_2624
Kelch repeat-containing protein (372 aa)
 
          0.956
Slin_2625
Dihydrodipicolinate synthetase (315 aa)
 
          0.934
Slin_2626
RagB/SusD domain-containing protein (507 aa)
 
          0.848
Slin_2627
TonB-dependent receptor plug (1117 aa)
 
          0.803
Slin_2630
N-acylglucosamine 2-epimerase (417 aa)
 
          0.598
Slin_4078
Lipopolysaccharide biosynthesis protein (349 aa)
   
          0.597
Slin_4760
TonB-dependent receptor plug (1100 aa)
   
          0.593
Slin_4261
Sulfatase (506 aa)
   
          0.590
Slin_2629
Glycosyl hydrolase (397 aa)
 
          0.571
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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