STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2647KEGG: eum:ECUMN_4892 putative integral membrane protein; putative sugar permease. (331 aa)    
Predicted Functional Partners:
Slin_2648
PFAM: ADP-ribosylation/Crystallin J1; KEGG: hypothetical protein.
 
     0.941
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.857
Slin_2646
PFAM: ROK family protein; KEGG: ank:AnaeK_0168 ROK family protein.
     
 0.629
Slin_2645
KEGG: ara:Arad_4654 hypothetical protein.
       0.624
Slin_4320
PFAM: Glycosyl hydrolase family 32 domain protein; KEGG: mxa:MXAN_5247 glycosy hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.485
Slin_2644
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C0078 putative zinc-binding dehydrogenase.
  
    0.479
Slin_2643
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: scl:sce6224 AraC family transcriptional regulator.
       0.465
Slin_5049
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: hypothetical protein.
 
    0.462
Slin_2650
Hypothetical protein.
       0.447
Slin_0437
PFAM: oxidoreductase domain protein; KEGG: sea:SeAg_B4707 inositol 2-dehydrogenase.
  
     0.417
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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