STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2652PFAM: Xylose isomerase domain protein TIM barrel; KEGG: amc:MADE_00428 twin-arginine translocation pathway signal. (283 aa)    
Predicted Functional Partners:
Slin_2651
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tcx:Tcr_1802 hypothetical protein.
       0.773
Slin_2650
Hypothetical protein.
       0.588
Slin_0049
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: avi:Avi_5583 oxidoreductase.
  
    0.551
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
    0.505
Slin_1890
KEGG: cja:CJA_3100 hypothetical protein.
 
     0.467
Slin_6564
KEGG: cja:CJA_3100 hypothetical protein.
 
     0.447
Slin_1925
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: ecy:ECSE_1367 putative dehydrogenase.
  
    0.439
Slin_0048
Hypothetical protein.
 
    0.429
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.