STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2708Hypothetical protein; KEGG: bph:Bphy_2992 TPR repeat-containing protein. (246 aa)    
Predicted Functional Partners:
Slin_2709
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: ppg:PputGB1_1599 RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.843
Slin_2707
Hypothetical protein; KEGG: potential subtilisin/S8 serine protease similar to S. cerevisiae YCR045C; one of two in tandem duplication.
     
 0.763
Slin_2706
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: glo:Glov_2533 TPR repeat-containing protein.
       0.759
Slin_2710
PFAM: peptidase M50; KEGG: scl:sce1715 integral membrane protease.
     
 0.609
Slin_2711
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpd:RPD_2835 HAD family hydrolase.
       0.438
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.