STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2801Low specificity phosphatase (HAD superfamily)- like protein; KEGG: rma:Rmag_1043 3-deoxy-D-manno-octulosonate 8- phosphate phosphatase. (233 aa)    
Predicted Functional Partners:
Slin_2802
TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: glo:Glov_2172 2-dehydro-3- deoxyphosphooctonate aldolase.
 
  
 0.975
kdsB
3-deoxy-D-manno- octulosonatecytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
  
 0.967
Slin_5889
KEGG: tcx:Tcr_0976 phosphatase KdsC.
     
  0.900
Slin_5962
KpsF/GutQ family protein; KEGG: hypothetical protein LOC100198311; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.728
Slin_5723
PFAM: regulatory protein TetR; KEGG: bja:blr0601 transcriptional regulatory protein.
  
     0.695
Slin_2803
PFAM: iron-containing alcohol dehydrogenase; KEGG: saz:Sama_1640 alcohol dehydrogenase, iron- containing.
 
     0.643
Slin_2804
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: slo:Shew_1858 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.511
Slin_2799
TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: fta:FTA_1562 thiamine pyrophosphokinase.
       0.498
Slin_0567
Hypothetical protein.
  
     0.481
Slin_4556
Hypothetical protein.
 
     0.466
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.