STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2814KEGG: afw:Anae109_3731 hypothetical protein. (1224 aa)    
Predicted Functional Partners:
Slin_2813
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: hch:HCH_04271 hypothetical protein.
 
     0.944
Slin_2866
KEGG: pst:PSPTO_5290 hypothetical protein.
 
     0.757
Slin_3935
PFAM: phosphoesterase PA-phosphatase related; KEGG: ade:Adeh_2099 phosphoesterase, PA-phosphatase related.
 
     0.627
Slin_1185
Hypothetical protein.
  
     0.600
Slin_1307
TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: scl:sce3596 hypothetical protein.
  
 
 0.594
Slin_5920
Membrane-associated zinc metalloprotease; KEGG: pca:Pcar_1914 putative membrane-associated Zn- dependent protease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein.
  
  
 0.593
Slin_5311
Hypothetical protein; KEGG: gbm:Gbem_3603 tetratricopeptide TPR_2 repeat protein.
  
 
 0.568
Slin_2495
Hypothetical protein; KEGG: sfr:Sfri_2482 lysine exporter protein (LysE/YggA).
  
     0.551
Slin_3235
Hypothetical protein.
  
    0.533
Slin_4371
PFAM: cell surface receptor IPT/TIG domain protein; SMART: cell surface receptor IPT/TIG domain protein; KEGG: scl:sce0352 hypothetical protein.
  
 
 0.525
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.