STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2829PFAM: TonB-dependent receptor plug; KEGG: hypothetical protein. (803 aa)    
Predicted Functional Partners:
Slin_2828
Hypothetical protein.
 
     0.690
Slin_6005
Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; KEGG: predicted protein; K01933 phosphoribosylformylglycinamidine cyclo-ligase.
  
     0.659
Slin_3585
TIGRFAM: putative membrane protein.
  
     0.596
Slin_2385
KEGG: gbm:Gbem_3438 hypothetical protein.
  
     0.590
Slin_5341
Hypothetical protein.
 
     0.566
Slin_1304
Hypothetical protein.
  
     0.543
Slin_3583
TIGRFAM: putative membrane protein.
  
     0.535
Slin_5680
KEGG: rpe:RPE_4757 protein of unknown function DUF983.
  
     0.531
Slin_0793
Hypothetical protein.
  
     0.530
Slin_1353
Hypothetical protein; KEGG: pat:Patl_3492 twin-arginine translocation pathway signal.
  
     0.519
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.