STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2908PFAM: Phosphoglycerate mutase; KEGG: phosphoglycerate mutase family protein; Belongs to the phosphoglycerate mutase family. (219 aa)    
Predicted Functional Partners:
Slin_2909
PFAM: thioesterase superfamily protein; KEGG: ppd:Ppro_2603 hypothetical protein.
       0.618
Slin_2995
Hypothetical protein.
  
     0.596
Slin_6034
Hypothetical protein.
  
     0.579
Slin_5836
PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
  
 
  0.576
Slin_2911
Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: gsu:GSU1700 malic enzyme.
  
  
 0.544
Slin_2910
Hypothetical protein.
       0.508
Slin_2907
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sde:Sde_3001 DEAD/DEAH box helicase-like.
       0.497
Slin_2671
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: structure-specific recognition protein, putative; K09272 structure-specific recognition protein 1.
  
     0.481
Slin_1445
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
     0.467
Slin_0714
KEGG: ank:AnaeK_3565 hypothetical protein.
 
     0.452
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.