STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2955PFAM: protein of unknown function DUF6 transmembrane; KEGG: xfa:XF0250 hypothetical protein. (315 aa)    
Predicted Functional Partners:
Slin_2954
KEGG: dat:HRM2_29890 hypothetical protein.
       0.625
Slin_2953
PFAM: glycosyl transferase family 2; KEGG: afw:Anae109_0092 glycosyl transferase family protein.
  
   0.622
Slin_2956
PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00415 permease.
       0.599
Slin_5609
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sdn:Sden_1685 hypothetical protein.
  
 
   0.570
Slin_2314
PFAM: DoxX family protein; KEGG: gme:Gmet_3019 methylamine utilization protein MauE, putative.
  
 
   0.568
Slin_5517
Hypothetical protein.
  
     0.558
Slin_5541
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: mms:mma_3204 ferric uptake regulator family protein; Belongs to the Fur family.
  
     0.458
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: maq:Maqu_1870 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.448
Slin_1983
Hypothetical protein.
  
     0.442
Slin_5919
KEGG: pha:PSHAb0058 putative orphan protein.
  
     0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.