STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_2977Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (397 aa)    
Predicted Functional Partners:
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 0.973
Slin_1000
PFAM: GHMP kinase domain protein; GHMP kinase; KEGG: hypothetical protein.
 
 0.955
Slin_0624
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sde:Sde_1285 beta-galactosidase/beta- glucuronidase-like; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.921
Slin_4039
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: xac:XAC4250 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.921
Slin_5839
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: pna:Pnap_1059 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.915
Slin_1719
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: cja:CJA_0532 beta-galactosidase, putative, bgl2B; Belongs to the glycosyl hydrolase 2 family.
  
 
 0.907
Slin_2562
PFAM: ROK family protein; KEGG: ara:Arad_9637 transcriptional regulator protein.
  
 
 0.906
Slin_2646
PFAM: ROK family protein; KEGG: ank:AnaeK_0168 ROK family protein.
  
 
 0.906
Slin_5156
PFAM: ROK family protein; KEGG: gme:Gmet_1639 glucokinase.
  
 
 0.906
Slin_6585
PFAM: ROK family protein; KEGG: ftw:FTW_0827 ROK family protein.
  
 
 0.906
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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