STRINGSTRING
Slin_3000 protein (Spirosoma linguale) - STRING interaction network
"Slin_3000" - Phosphodiesterase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3000Phosphodiesterase (163 aa)    
Predicted Functional Partners:
Slin_2999
AMP-dependent synthetase and ligase (563 aa)
              0.712
Slin_0436
Hypothetical protein (429 aa)
   
          0.512
Slin_1306
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (103 aa)
   
          0.509
Slin_2316
Hypothetical protein (179 aa)
   
          0.505
Slin_0367
Hypothetical protein (147 aa)
   
          0.438
Slin_2998
Na+ dependent nucleoside transporter domain-containing protein (413 aa)
              0.429
Slin_6636
TonB-dependent receptor plug (992 aa)
   
          0.416
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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