STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3008KEGG: competence protein ComEC. (419 aa)    
Predicted Functional Partners:
Slin_3009
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cak:Caul_1971 glycerophosphoryl diester phosphodiesterase.
       0.748
Slin_0115
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rhi:NGR_b19930 putative sugar phosphate isomerase/epimerase.
  
     0.591
Slin_3010
KEGG: xcb:XC_1619 Oar protein.
  
    0.547
Slin_3316
Hypothetical protein; KEGG: rpt:Rpal_3141 collagen triple helix repeat.
  
    0.434
Slin_1764
Hypothetical protein; KEGG: similar to MUC4.
  
     0.428
Slin_4692
KEGG: rle:RL3795 hypothetical protein.
  
     0.425
Slin_4321
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: ATP-binding region ATPase domain protein; response regulator receiver; Helix-turn-helix, AraC domain; histidine kinase A domain protein; KEGG: sde:Sde_0667 response regulator receiver domain-containing protein.
 
  
 0.400
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.