STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (359 aa)    
Predicted Functional Partners:
Slin_4991
KEGG: pca:Pcar_0278 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
   
 0.971
Slin_3968
KEGG: ara:Arad_7947 L-seryl-tRNA(ser) selenium transferase protein.
    
 0.920
Slin_1780
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: acp:A2cp1_4094 thioredoxin reductase.
     
 0.909
Slin_3270
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbt:BBta_5550 putative thioredoxin reductase, FAD/NAD(P)-binding.
     
 0.909
Slin_4060
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: cco:CCC13826_0149 pyridine nucleotide- disulphide oxidoreductase.
     
 0.909
Slin_6098
PFAM: response regulator receiver; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; SMART: response regulator receiver; KEGG: bph:Bphy_4576 response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
 0.909
Slin_0166
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: reh:H16_B1515 cysteine desulfurase (SufS); Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
 0.907
Slin_2612
PFAM: aminotransferase class V; KEGG: scl:sce8911 class-V aminotransferase.
    
 0.907
Slin_4051
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: kpe:KPK_1257 cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
 0.828
Slin_4680
Cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bpt:Bpet2777 cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
 0.804
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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