STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3045PFAM: conserved hypothetical protein; KEGG: gur:Gura_0608 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Slin_0521
KEGG: bba:Bd3524 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
 0.765
Slin_3043
PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: nmc:NMC1418 putative membrane peptidase.
       0.742
Slin_3044
Hypothetical protein.
       0.714
Slin_5592
PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: predicted protein; K10563 formamidopyrimidine- DNA glycosylase; Belongs to the FPG family.
   
  
 0.564
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.519
Slin_6518
KEGG: hypothetical protein.
  
     0.492
Slin_5501
PFAM: metallophosphoesterase; KEGG: bpt:Bpet3921 phosphohydrolases.
 
     0.468
Slin_5517
Hypothetical protein.
  
     0.454
Slin_4066
PFAM: Thioredoxin domain; KEGG: AGAP012940-PA.
 
     0.453
Slin_1344
KEGG: hypothetical protein.
  
   
 0.440
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.