STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3076PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vsp:VS_II0095 glyoxalase/bleomycin resistance protein/dioxygenase. (130 aa)    
Predicted Functional Partners:
Slin_5172
PFAM: beta-lactamase domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: metallo-beta-lactamase superfamily protein; K01069 hydroxyacylglutathione hydrolase.
  
 
 0.905
Slin_0839
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fph:Fphi_0487 glyoxalase family protein.
  
  
 
0.903
Slin_0838
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ara:Arad_4048 hypothetical protein.
     
  0.900
Slin_3014
PFAM: beta-lactamase domain protein; KEGG: ara:Arad_3162 hydrolase protein.
     
 0.900
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.815
ilvA
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
   
 0.806
Slin_2740
PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: dvm:DvMF_0011 serine dehydratase alpha chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.
   
 
  0.801
Slin_2753
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cak:Caul_3839 amine oxidase.
     
  0.800
Slin_3776
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cak:Caul_3839 amine oxidase.
     
  0.800
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
  0.800
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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