STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3141Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pla:Plav_2251 MarR family transcriptional regulator. (146 aa)    
Predicted Functional Partners:
Slin_3140
TIGRFAM: peroxiredoxin, Ohr subfamily; PFAM: OsmC family protein; KEGG: spe:Spro_0130 OsmC family protein.
  
 0.991
Slin_3139
PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pfs:PFLU4576 putative oxidoreductase.
      0.809
Slin_3142
KEGG: tdn:Suden_0219 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
  
  
 0.537
Slin_0040
Peroxiredoxin; PFAM: glutathione peroxidase; KEGG: hypothetical protein.
 
  
 0.430
Slin_0317
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC- type glycine betaine transport system; KEGG: reu:Reut_A1451 binding-protein dependent transport system inner membrane protein.
  
  
 0.417
Slin_3143
Putative two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: pca:Pcar_1960 response regulator transcription factor.
       0.417
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.