Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Slin_3196 | Slin_3197 | Hypothetical protein. | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | 0.464 |
Slin_3197 | Slin_3196 | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | Hypothetical protein. | 0.464 |
Slin_3197 | Slin_3501 | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ara:Arad_7246 hypothetical protein. | 0.470 |
Slin_3197 | Slin_3502 | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: ccs:CCNA_03621 transcriptional regulator, AraC family. | 0.457 |
Slin_3197 | Slin_4409 | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pfs:PFLU3267 homoprotocatechuate degradative operon repressor. | 0.460 |
Slin_3197 | Slin_4921 | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mxa:MXAN_2922 sugar transferase. | 0.674 |
Slin_3501 | Slin_3197 | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ara:Arad_7246 hypothetical protein. | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | 0.470 |
Slin_3501 | Slin_3502 | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ara:Arad_7246 hypothetical protein. | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: ccs:CCNA_03621 transcriptional regulator, AraC family. | 0.485 |
Slin_3502 | Slin_3197 | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: ccs:CCNA_03621 transcriptional regulator, AraC family. | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | 0.457 |
Slin_3502 | Slin_3501 | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: ccs:CCNA_03621 transcriptional regulator, AraC family. | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ara:Arad_7246 hypothetical protein. | 0.485 |
Slin_4409 | Slin_3197 | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pfs:PFLU3267 homoprotocatechuate degradative operon repressor. | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | 0.460 |
Slin_4921 | Slin_3197 | TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mxa:MXAN_2922 sugar transferase. | PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00016 hypothetical protein. | 0.674 |