STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3204PFAM: oxidoreductase domain protein; KEGG: mmw:Mmwyl1_0028 oxidoreductase domain- containing protein. (478 aa)    
Predicted Functional Partners:
Slin_3547
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cak:Caul_3785 oxidoreductase domain- containing protein.
  
     0.590
Slin_0394
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mpo:Mpop_3447 oxidoreductase domain protein.
  
     0.569
Slin_5725
PFAM: protein of unknown function DUF1080; KEGG: pnu:Pnuc_1112 hypothetical protein.
 
     0.567
Slin_3487
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: met:M446_6624 oxidoreductase domain- containing protein.
  
     0.560
Slin_3203
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ccs:CCNA_01282 gluconolactonase.
  
    0.538
Slin_0438
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
 
    0.499
Slin_4651
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
 
    0.485
Slin_3462
PFAM: protein of unknown function DUF1080; KEGG: swd:Swoo_0366 hypothetical protein.
 
    0.454
Slin_0439
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ppr:PBPRB0461 myo-inositol catabolismprotein IolB.
  
    0.433
Slin_5816
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mes:Meso_0261 oxidoreductase-like.
  
     0.424
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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