STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3208PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (823 aa)    
Predicted Functional Partners:
Slin_2239
KEGG: gme:Gmet_1389 hypothetical protein.
  
     0.574
Slin_3209
KEGG: scl:sce2886 hypothetical protein.
       0.553
Slin_3122
Hypothetical protein; KEGG: cti:RALTA_B0326 conserved hypothetical protein, BNR repeats; putative outer membrane protein.
  
 
   0.493
Slin_0180
KEGG: similar to C6orf205 protein.
  
 
   0.479
Slin_3860
PFAM: O-antigen polymerase; KEGG: see:SNSL254_A2266 O-antigen polymerase.
  
     0.478
Slin_3858
PFAM: lipopolysaccharide biosynthesis protein; KEGG: dar:Daro_2398 lipopolysaccharide biosynthesis.
  
     0.475
Slin_5308
Hypothetical protein.
  
     0.448
Slin_1673
PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP2818 hypothetical protein.
  
     0.429
Slin_6142
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mxa:MXAN_6044 TonB-dependent receptor.
  
     0.427
Slin_1514
Hypothetical protein; KEGG: oca:OCAR_5944 BNR/Asp-box repeat domain protein.
  
 
   0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.