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Slin_3380 protein (Spirosoma linguale) - STRING interaction network
"Slin_3380" - ATPase AAA in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3380ATPase AAA (632 aa)    
Predicted Functional Partners:
Slin_3331
DEAD/DEAH box helicase (441 aa)
 
    0.956
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (91 aa)
   
    0.953
Slin_5691
DEAD/DEAH box helicase (475 aa)
   
    0.950
Slin_3330
DEAD/DEAH box helicase (447 aa)
   
    0.950
Slin_3329
DEAD/DEAH box helicase (380 aa)
   
    0.950
Slin_2449
DEAD/DEAH box helicase (485 aa)
   
    0.950
Slin_1766
DEAD/DEAH box helicase (535 aa)
   
    0.950
Slin_0250
DEAD/DEAH box helicase (643 aa)
   
    0.950
rplW
50S ribosomal protein L25; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (95 aa)
     
    0.948
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (101 aa)
     
    0.948
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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