STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (286 aa)    
Predicted Functional Partners:
Slin_3404
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sde:Sde_2646 phosphatidylserine decarboxylase.
 
 0.985
Slin_6198
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ect:ECIAI39_0671 putative short-chain dehydrogenase/reductase SDR precursor.
 
 
 0.907
Slin_0245
TIGRFAM: signal peptidase I; PFAM: Peptidase S24, S26A and S26B, conserved region; KEGG: glo:Glov_1621 signal peptidase I; Belongs to the peptidase S26 family.
   
    0.861
Slin_1024
PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein.
 
   
 0.768
Slin_0551
PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase.
 
   
 0.703
Slin_1056
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: tau:Tola_3026 mannitol dehydrogenase domain protein.
 
   
 0.683
Slin_1247
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: yen:YE3707 altronate oxidoreductase.
 
   
 0.681
Slin_1019
PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein.
 
   
 0.664
Slin_4784
PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.603
Slin_1253
PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.586
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.