STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3429Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: sdn:Sden_0578 penicillinase repressor. (123 aa)    
Predicted Functional Partners:
Slin_3430
PFAM: peptidase M56 BlaR1; KEGG: ccs:CCNA_01711 transcriptional regulator.
 
  
 0.964
Slin_5967
PFAM: peptidase M56 BlaR1; KEGG: scl:sce7487 penicillin-binding transpeptidase.
 
  
 0.834
Slin_6187
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56 BlaR1; KEGG: slo:Shew_2995 TonB family protein.
 
     0.718
Slin_5186
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: mxa:MXAN_4242 putative transcriptional regulator.
  
     0.624
Slin_6188
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56 BlaR1; KEGG: dds:Ddes_1461 TonB family protein.
 
     0.533
Slin_5187
PFAM: peptidase M56 BlaR1; KEGG: mxa:MXAN_4243 hypothetical protein.
 
  
 0.478
Slin_3428
PFAM: histidine kinase dimerisation/phosphoacceptor; TPR repeat-containing protein; ATP-binding region ATPase domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide repeat; KEGG: gur:Gura_1729 signal transduction histidine kinase.
       0.444
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.