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Slin_3429 protein (Spirosoma linguale) - STRING interaction network
"Slin_3429" - CopY family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3429CopY family transcriptional regulator (123 aa)    
Predicted Functional Partners:
Slin_3430
Peptidase M56 BlaR1 (447 aa)
 
          0.972
Slin_5967
Peptidase M56 BlaR1 (621 aa)
   
          0.778
Slin_5186
CopY family transcriptional regulator (121 aa)
   
          0.753
Slin_6187
TonB family protein (472 aa)
   
          0.646
Slin_6174
Crp/Fnr family transcriptional regulator (212 aa)
   
          0.465
Slin_3591
TonB-dependent receptor plug (730 aa)
   
          0.462
Slin_2437
Hypothetical protein (178 aa)
   
          0.445
Slin_6188
TonB family protein (804 aa)
 
          0.430
Slin_3428
Signal transduction histidine kinase (693 aa)
              0.428
Slin_0467
Hypothetical protein (261 aa)
   
          0.428
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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