STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_3434PFAM: protein of unknown function DUF433; KEGG: lch:Lcho_4191 hypothetical protein. (78 aa)    
Predicted Functional Partners:
Slin_3433
KEGG: rpt:Rpal_0895 hypothetical protein.
 
   
 0.951
Slin_5531
PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2761 hypothetical protein.
  
     0.775
Slin_1154
PFAM: protein of unknown function DUF433; KEGG: rpe:RPE_2627 protein of unknown function DUF433.
  
     0.773
Slin_3432
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: cja:CJA_3344 AP endonuclease family 2 C terminus family.
       0.773
Slin_5909
KEGG: dol:Dole_1815 hypothetical protein.
 
   
 0.746
Slin_5532
KEGG: rpa:RPA2819 hypothetical protein.
 
   
 0.715
Slin_4512
KEGG: afr:AFE_1368 hypothetical protein.
 
   
 0.697
Slin_1155
KEGG: rpa:RPA2819 hypothetical protein.
 
   
 0.670
Slin_0491
KEGG: psa:PST_3436 hypothetical protein.
  
   
 0.663
Slin_1443
KEGG: rpe:RPE_2423 hypothetical protein.
  
     0.658
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.